Scaffold Ga0181531_10001250

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10001250
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16188
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006125	Metagenome / Metatranscriptome	381	Y
F006229	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_1000125010	F000512	N/A	MERHRHSKGKPTPRIAILRETHDTPPQVAARMAHAGGFNRYGEPNYRAIWGWNRLAWIGGKFTDRDERGDLLREVVELRREPKYPAVNRWHIERWMSPESYGSPRQWYAQSIERENGISVPALGPYPSRGDYEHCFTLEDPQGGFLQLTTAAAEHIAHAIEYARKSPRPAGKRRLNDRQQREEAAYDQYAYDVLDDAVPAFHQQPFVTVL*
Ga0181531_100012502	F006229	GGAGG	LLQQDDVVLLVNISPEKWPPRQRTYFGSLEIRAPQPGEPYALTPVRGCTGFLDFGDKRVMDYKITAREIADDLAREINSDSGDASFHGVFVAAGETPTPEELQDARERLDNFHRRLVDAADLEWERTKNPMFITDLERRAARLLGLEKPWLYNAKPLDDCPVCAEKIKPGVAVCKSCRAILNPEKAAQYGLFPASAAHAATQPATPAQHATNPAPPKKPHSTHEAGK*
Ga0181531_100012507	F006125	AGGAGG	MSIQLTLLPSNEDGSGSNLYYAIAQLTFSGSYVVGGDTIDFTTVADKLPSTQIIQAFADSQNGASGYYVPVAGTALNNWKLKCFTGGGTELTAVAYSTTFVATDVVQLTITARKLL*
Ga0181531_100012508	F000696	AGGA	MPVVGSSAYNTAGQITALVRSLLNDAAGNLFTDTVLLPYANSAYRKVQRALGNAGGGGFIQDDALLVVTAVTAVDPSLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFTEMVDVSQHGGLPSREQDTTLSIWEWRADGLYFLGATQDTQIRLRYSKAFPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLSERWDEAASDALEDLVAAAVRREQNSQRRRRPFSWRTGYTPF
Ga0181531_100012509	F000739	N/A	MRLTHTQIWLRGILAAAISGAAGGVLTGFAAVGIDPQHFNLQSGVSATMHIAEAAALINAVIGVAAYLQKSPLPDS*