Scaffold Ga0181531_10000231

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10000231
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40330
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009613	Metagenome / Metatranscriptome	315	Y
F029226	Metagenome	189	N
F045330	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_100002311	F029226	GAGG	MSEQKEKDLFPQKARLAQLSDSLYGSPSELVAREARELLRRAGIDPEDLKARLYRKFDALAKQYAASGRPVPALLKQALSDLRPGAPGSPKERALVREARAAIRSVIDHARRMQEQLARPPRVTLATAYRNKKELSERDKKLLDDLAEDLLKHNNRSRPKD
Ga0181531_100002312	F045330	GAGG	LEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYIEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEQSRSSLPVERDADPAPRSLDELPGSTIDFAGSIDEERYGERARTAFAGEPDLAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVERKTA*
Ga0181531_100002314	F009613	GAG	LQSGVELLYRAIKSNVADSLHGVIQIKRRPGRRYVSEVLEINSYDAHGDPFDYCAIYQR*