Scaffold Ga0181531_10000200

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10000200
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44202
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001621	Metagenome / Metatranscriptome	662	Y
F002218	Metagenome / Metatranscriptome	582	Y
F003467	Metagenome / Metatranscriptome	485	Y
F007124	Metagenome / Metatranscriptome	357	Y
F024632	Metagenome / Metatranscriptome	205	Y
F076358	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_1000020011	F076358	GGAG	MSFLHSSHPRKVLWLFYFSAFLSALIFGAASYASVSYQRPLLVLALVTALAAAFFLVLFLRSRDERERQINYRALTFAFVGTFVFSLVVGLAQRLGFHSLSWLGIPVLMITLWSAGLILNSWRDQ*
Ga0181531_1000020014	F024632	N/A	MERRKLETRSKQREARLRRKYPEVHGKVVDFITHTIDDGTMYFTVRFTDQTSFCVRYACDMFAVGAEISDWQSGDFHIIREYIKPIPR*
Ga0181531_1000020023	F003467	GGAG	MIWARHLKLIAKVGVAALALGALATNGNAQNIYQGKFTLPFETHWGNATLPAGDYTFVMSSASSDYRLYIRGEKVNAMIMAAVADEKAISGPAQLNLVDIADTQTVQSFDAPELGKTFVYSTPTQKHMGRKEAHQKATPQSAPATQSSENRTSIAVQAAGR*
Ga0181531_1000020029	F007124	AGGAG	MKLICGVLALACVPVALAKNNAAIPNEKLAEFVVDKLDVTTLPASIRPKPEKKKKTFSDYGYATRRVEEKEALVEATPGGAQIDIRILEQKASGIYVCVGGPGQNASSGQIQRVFLLKLKNADGLLKGRESWREFSGCPVIGTDPASAGDSYGG*
Ga0181531_1000020032	F002218	AGGAGG	MRNSSSGHAAQAIERVLELSADAQMTRRITRKDSPAFHSLTGAIAAYGKALAILTALQQREEFYTIIAQSELSGRISAAS*
Ga0181531_1000020033	F001621	AGGAGG	MDNQVLKYVTQERAALLLGIPEEELSRISCELEIGHTERAGDQKETFFTYEELRQICLLTTHQLIGRKF*