Scaffold Ga0181531_10000107

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10000107
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63591
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (54.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000775	Metagenome / Metatranscriptome	896	Y
F005638	Metagenome / Metatranscriptome	394	Y
F006125	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_1000010724	F000775	GGAGG	MSSLDSVFAAYVLGWAVFFVFYLTVARRTATLDKEVERLKNTLNRGK*
Ga0181531_1000010737	F006125	AGGAG	MRISITLLPGNEDGSGSNLFYAIGTLTFSGSYPTGGDTLDFTTVASFLPSDTVIQVFADSQNGKFHVLRSGAGKRSG*
Ga0181531_1000010742	F005638	GGA	MSVKPELAFAVCWEVNRGAREGMESKRGISARNWRDTGKFLWRPDFPARLNEWVADFALAGQKALDGPDWASRMVLFRLYYLGLAPPENARHFLG*