Scaffold Ga0181531_10000057

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10000057
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92310
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (73.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004554	Metagenome / Metatranscriptome	433	Y
F004609	Metagenome / Metatranscriptome	431	Y
F061100	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_1000005710	F061100	AGGAG	MKPASLILLAALACGALAFSAAVPQQADSAQEWRQTERTDAVRGAYIRYSLAGKFLKTPPGDASNRPSLVVDCSADNRSHKPKFFRGTLVVGDPLKIDWVEPQEINGIGYFPKVLVVYRLDEGKQDKEDWSPANDKTAATFSKGSLEKMLRARTVEITAEDARGAQVAMQFDMPVGTVVEQGCDVDHKK*
Ga0181531_1000005739	F004554	GGAGG	MQYAIVAILNTYAEAEAAVRDLELAGIRGEQVEVITDIAADARTANTPGEPSTKQQEPPHNWLARLFGPGGPFEKREASDLSGDQPNYIGDQQFYANHLKEGGAVIMVRTKEEQPANRAAAILRDHGARTPGQKDGPTIRRIP*
Ga0181531_1000005770	F004609	N/A	VYILASLGGQTGNVRKNLRHAAGGLMKRSSLFHVLVATSFSVLLICPALARQGTKMAPDAKTMTIEGAVRDLACPIQNPAGTATSFSLQCTLDCVRHGSPIIILTKAGLIYFPISEYMPDTDQREKMMPFVGKYVQATGPVFTRNGTRAIAIKQIKELKSVHLDTDAR*