Scaffold Ga0181534_10015001

Overview

Basic Information

• Taxon OID: 3300014168
• Scaffold ID: Ga0181534_10015001
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3986
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F064903	Metagenome / Metatranscriptome	128	N
F090320	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181534_100150014	F090320	GGAGG	MIDPKTNQNRENSGFWTLSKFGGLDQLDWLMILVSVLIGTIAKQHHFLQLPDGFLEWVLPFLLMMAGYKARGKITEIIEVRRAEAKQAPNE*
Ga0181534_100150015	F064903	GAGG	MRLLFPSNYDRADVLMSAGCSTFVSAALILVIPRIGVLLLEILFGLFFIGCALMARARVRRRVLGKEGPKKSSDAKAKWFDRYDFLMILAVIVIQTVAARLLRKAGWSEGTVSILPLMMFAAGILLKPRVVEFVGCRRKTQPVVSDCGNIASQPGNLDPTDHVLGPE*
Ga0181534_100150017	F001528	GGA	MNSATSLAVKKEKPMSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKAFSFRRGRFSMREYRGGA*