Scaffold Ga0181534_10000895

Overview

Basic Information

• Taxon OID: 3300014168
• Scaffold ID: Ga0181534_10000895
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20439
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001403	Metagenome / Metatranscriptome	704	Y
F004328	Metagenome / Metatranscriptome	443	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181534_1000089513	F001403	GGA	METSTFDFVYLESDPQTQQPSACVYLKAEGAEDYAGVKADRLVSVPCLSFTELDAEIRRLHAELEEVRARAKKKFYKAHSAAAGA*
Ga0181534_1000089514	F001403	N/A	METSTLDLAYLESDPSTRQPSACIYVKARSRKSYAGVAADKLLTSRCLNFIELDAEIRRIHAELEEIRARARKKFYRAESAAAGAA*
Ga0181534_100008952	F004328	AGGA	MLDESNSNPLPLETSAPPAQPGPTIRIGDEFGTAKRNLPPAPILLFALAGVLIIAGIASFLQRAKPQGSGSLDNVAAVQIPGQTATLVALTFTLRNSGKKPLWVHNIQAGLVTEAGESVADAVSAIDFDRYYQAFPSLKQEAQPPLVPEDKLPPGQELKRTVIVSFPVMLEAFNRRHAVSVIVQPYDQPLPVILSK*