NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181528_10009186

Scaffold Ga0181528_10009186


Overview

Basic Information
Taxon OID3300014167 Open in IMG/M
Scaffold IDGa0181528_10009186 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5920
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009261Metagenome320Y
F025900Metagenome199N
F044872Metagenome153N
F050080Metagenome145N
F062380Metagenome130N
F085038Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181528_1000918610F050080N/AMHNLNQQRKCPKEGNQMASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQPMGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESIAEALASAA*
Ga0181528_1000918612F062380GAGGMPSDFNDFECNDFEKLLFADPGSTGACKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0181528_1000918613F044872N/ALNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKEARQVLSFYLIQLYANHLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0181528_100091863F085038GGAGGMKLIFGFLLFIAIVAITGGLYLIIRKEDDKKCDLQRLYSLPSQIARRVQSLGDYLFSLFCSKPAANNEHPTAGVTAAA*
Ga0181528_100091865F009261AGGAGMILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKEATLKWIDKNKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAAKKHTMSVLKGVA*
Ga0181528_100091869F025900N/AMSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEAPAEQINTDPFPDGEFGKEAA*

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