Scaffold Ga0181528_10001048

Overview

Basic Information

• Taxon OID: 3300014167
• Scaffold ID: Ga0181528_10001048
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17584
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025093	Metagenome / Metatranscriptome	203	Y
F027679	Metagenome / Metatranscriptome	194	Y
F071733	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181528_1000104812	F025093	N/A	VCFHSKRVVRTPDGRLQATGELAVTRVDRNVEAEPTEAYSGPVYGPPIIHRVSHEATFVFDLGDTNGSGQKDGGLQASGSTSMFREDFPQLVKTAVNTYWPTVVQEQNCQYPDASEAYSGAECTGTYLATAGLPEAPHEGGGEGVGVQQNFSAIVGNQLTVLVQLRLVPRSSAEAAVAGN
Ga0181528_1000104813	F027679	GGA	VVKPTVAVAVPKLSDRGFEVKETTMLKHVTVFAVAVILGLAVLGLDTPNKPVSLAGSWQVDTRHSDAKLITDATTDYGKTKINVALGYARIRGDFKIDDADPAKSNIEFRFYPATSMATSHC*
Ga0181528_100010483	F071733	GAGG	MSSPQQDLTRLSDVAFESPAVIPANGKATNEAVANATKNTPSKTMFAPASRKAAEAAKKGTTSASRTGKAKQVSYEFGKPPKGIYVKVHPSAAYHTYCLPVFVNENEGTFHYIDPELFDSGELPERFRNVCKLMDIHAAGCADGTFFLWYVFVSSSKWRKAAVKAVDEAKREYVIVSSIKARQTYSVEITDQPIPEPKWASLPSFEQMLMDAFDSNINVADDKIVSDYMSGGVAAREDGDDE*