Scaffold Ga0181532_10049665

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10049665
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2776
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F040993	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_100496652	F014771	AGGAG	MKAKGSITQLFRNQHPGYILAEDGCMVAFDESSLDGPESQQLIVGDWVEYDEMEPATGKRAIHIKPISSFRENG*
Ga0181532_100496656	F019704	AGGTGG	MKRRIKVRELMQRVGLRGEVAELFHSRNTGLIHGDDGYDVTFNQESLVVGLSYRELSLGLKVSYGIFFTAGAKVPTAINVQPASGVQTEAAQATKNKDWTGAGGI*
Ga0181532_100496658	F040993	N/A	LFIFRALGQVLVFGAAGAAIVLLLQELVDPTPLFWSAPWEALQLVLSRRHRLNHAWLHRAQDLALELIGRSIETDGFAIANGFVLPGVGRNKQLVPWTVDSAWRGMTQKLERTSAPRTCKAVRFLVAAWLMIGGLLAMSIWRAIDLPGCLLIALLSAAAGHALAQPVENVFRECAANPAWLARDTQDFRFEVEPVEFPEWLWWQGGQGFIMPRVSVEDLGKD*