Scaffold Ga0181532_10006222

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10006222
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9971
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006325	Metagenome / Metatranscriptome	376	Y
F007808	Metagenome / Metatranscriptome	344	Y
F011530	Metagenome / Metatranscriptome	290	Y
F031223	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000622210	F031223	AGGAGG	MEHPLESLTKKEPKTDAELIAFSAVTRISHHLPISTVLSLPPSQLTPEQVYDSLLREAHALWDWYQGDVERRPPSGLSERTDRETWRPKTDSSFS*
Ga0181532_1000622215	F007808	GAGG	MFYSIWLLAAALAGWAGGKIAGDDGFGTLADILLGITGAFVVRWFLENIGISLKDVYLLLFSIWGAAALPTAVRLGIRRHNRSKTRSRLEND*
Ga0181532_100062226	F011530	GGAGG	MKDIAELMQRLFEIQSSGRQRSPELIAEDERLMDALQKRNLAGKPTQTVRLSQDSPEWTRFKA*
Ga0181532_100062228	F006325	GAGG	MTNPMTDLDAYTDEELQQALARVLAQARGEVLNDAAVQKFWQLYQEIQRRELSVTGA*