Basic Information | |
---|---|
Taxon OID | 3300014164 Open in IMG/M |
Scaffold ID | Ga0181532_10001005 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 28116 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014056 | Metagenome / Metatranscriptome | 266 | Y |
F018974 | Metagenome / Metatranscriptome | 232 | Y |
F080284 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181532_1000100522 | F080284 | N/A | MFVLALVRGLAADAGAWENTPIPAWPHSRWIVKGLVGGEFMGFETVSSDRDSHGSHANRDVPDVRVIVKVAHGELRRLIQQRAEIAKRIGTIKQTIAGLCNLFGDDELTEDLRELVNGKVGVRRRGITQACRKVLMDAGCPLTARNVCEQIQLQTDLLCSENLVGSVTTVLSRLEQYGEARTVPRDRGPRAWVWVSAVENGSFHPLNSAVDSQA* |
Ga0181532_100010058 | F018974 | GGA | MSSQPSSKIRSSTQDRGMRLKAFLTAVMSLLSILVVGLGGIRKDVLWLWIGFVCCLVSGVFVQLFINRIKNDVASGRR* |
Ga0181532_100010059 | F014056 | N/A | VSLRETISAVIRLENGRQLRAQLRQLSITGGLLDLATFLEERAWVDLTIYLSSGAVRTTAEMMFPMRGDGGYLQPFRFTSMGAEELHALDREVTGLLRQFVKSRTGESGWRAPRYYLESW |
⦗Top⦘ |