Scaffold Ga0181532_10000745

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000745
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32523
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y
F038890	Metagenome	165	Y
F097840	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000074514	F010114	GAGG	MIIELNDDDTRLLHRVLLEQAQEHLSYADTSEVADRLYRLAARLERRVRDVPNMTTG*
Ga0181532_1000074515	F001596	AGGAG	MSWFHSSTAPVDARNHASPAEVVACFQDQGNVLGRLAFLITGDHATADQAVVQACKITLQGNSPFRDWLFEWAKAATIASAISHGAKAIRICEATHKDRRCPHLEHLSQGDAEERAATLDLILGADTKKLLTELDSLCRAVLILRVAIRSSIQDCALRLNVSRPAVLGANCHAMTWLHHGNARQVGENHDASHAV*
Ga0181532_1000074516	F006278	GAGG	MFRAEIRWLASGPTLKLEGKLVADWAEQARCLVTKDVLPQGLMVDLTEVSYVDSVGEQLLKWLASVGAVFIGGSVYAFAVCDRLRLPLMQRISERRKRHGSSGERSSIKHSHPVEAI*
Ga0181532_1000074520	F029198	GGAG	METESYPRAVRVQGEVIVLHCWACGTAHCVNQESCLPGELSHMVCSNSNCRMSMFLVNELVLDDKARKQMTRSELNARVSYSRFWK*
Ga0181532_1000074537	F097840	N/A	MLLQFSDLPRYAFGEPSAMTRLAVRTVMQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRGGRNILGVLDQNWEFANEICDLLNSLEDDPHIFLTEHDRKWLRAMDRAFRKVQHA*
Ga0181532_100007459	F038890	GGAGG	MFQITAATCCAFTFGEVLIMAAMNIESVRLSSEGRVRPNGAASQSKYARHVVRTGVPNAPQL*