Scaffold Ga0181532_10000098

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000098
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82913
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (64.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000426	Metagenome / Metatranscriptome	1154	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F003708	Metagenome / Metatranscriptome	473	Y
F020641	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000009830	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDSLVVGEKSESEVQESVRRWWALIHPADRPIAQKYLLMVLGRSASALDNMGDAFLSVSSCEVVRPQMADTALPHKRMRLLERMVKESSVRTAV*
Ga0181532_1000009831	F000249	N/A	MFFPHDTFWGWAQVDLAPPHNEIDPNQCAGNAGQYGGVNAPCSLFARYMISGILEVRPFGRTPLRRFMVYGAPAFLFGKTIPKTLYTWSPDAIGIEHSWGIGIYLNKGYEFRLTQHFLFDRLGARDTYLGVADLGTNGPWGRFMTVGVRKTFGTRRW*
Ga0181532_1000009843	F020641	AGGAGG	MSRTAVSRFGTLLAVAIVAFTTFAVTLHAAQTITTPNEAVVNYNLVGGASSSAVTPVSNEPVLVQGVQTAVGYRGVGHVSMLRVPSSFLEWTGIESPASAAITSGYSGTKGTHIVYLDYSHLVDIQVDTTDAFIIHNGNTVTQTGVVTLIW*
Ga0181532_1000009853	F000426	AGGGGG	MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDDDNGVLAEVDDATLQGDSMAAKAGAGSGSAASSKAARPTAPRWP*
Ga0181532_1000009863	F003708	AGGA	MKLALTLIMPTILLLELSSPATPPGIRGVHPFPAVTSQESEASALSSQVMIEPGARVGSLKLGDTRDRALELFPKKDEDQEWNNSCGTTLDWVDSQNPTGHGDLFIRLNKKGKIFQIESATTRFRTAEGITTFDHADKVAENYKDMRAYTLLTPPVPALGDRPLVYWIDKKNGIAFVFAYYSQEHKRYIYKIIVFEPNKTFCPEEETTSSPKWQAIPSYALEPPAELAPNLN*