Scaffold Ga0181532

Basic Information
Taxon OID	3300014164 Open in IMG/M
Scaffold ID	Ga0181532_10000064 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014164 Open in IMG/M

Scaffold ID

Ga0181532_10000064 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	102740
Total Scaffold Genes	103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (58.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

102740

Total Scaffold Genes

103 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (58.25%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.3 to .4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.3 to .4

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001431	Metagenome / Metatranscriptome	696	Y
F017747	Metagenome / Metatranscriptome	239	Y
F061220	Metagenome / Metatranscriptome	132	Y
F101760	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_100000646	F101760	GAG	LSFTFADGAQFGTVAKLFEPYSCSSPIRIPAWHNDLRFVILRYEGKVPVLASCEKCQRKFFTPPTLARDAVGAEEYLGQKFEVHVCPKEM*
Ga0181532_1000006487	F061220	GGAGG	MRLGSLFCLLLVLTGITAAQDTNFPVGPQYLMTSGSPLFSQPIATPSLALEAPLPEIPSLPQIGPVVENEPFVANPELRHQADLFPVYYGYKPISVVEISSAEPPRELPASLVDVGVIGMTDAQSLRVRGYGVPLGETASFWKAHKPHAPRIYTNADVQRVHNKD*
Ga0181532_1000006489	F017747	N/A	MIVILPVALVAQDTPAAMLRSNGIGVLVNKNPVPASTAVFAGDSIETEKNSVARIEVSGSTADLGPETIVEFQADELVLDHGSLSVNTSRGLRVRVGCVIVTPVNDAEWTHYDVVDLDGKVTVSALKNDVYIDTRSSHPQQAKQSAHSSRVTVREGEQKSREEKCGAGYIKSPGGGLSGLGAIMNSPWAMGAGVAGIGVIVCLGLVCRNDDAISPTKP*
Ga0181532_1000006495	F001431	GAG	MSTIQDVSAEQLAKLFHHYREALAHDCDGHGIRQESSSWDRAPQNERKLMVAAARLALLELATTPVPSNPSRKYYAKPGEAEWGC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181532_10000064

Overview

Ecosystem & Geography

Associated Families

Sequences