Scaffold Ga0181532_10000051

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000051
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117899
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (68.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000419	Metagenome / Metatranscriptome	1160	Y
F006325	Metagenome / Metatranscriptome	376	Y
F019689	Metagenome / Metatranscriptome	228	Y
F065012	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000005112	F000419	N/A	MERLKVYLFGATVLFASFGMGEAVYRLLFSEYDGMTDRIPVEVLFGLVFAWLATKFVGGVYRNRKERSARLNFIWTRNHQIRGALEGITPFAHPSKNQQSIRVIREEVDRIEWALKEILPR*
Ga0181532_1000005146	F019689	AGGAGG	MSPLVERSRAGSKSDPSDQHWSMLLFESLSAGTLAVGVGLAAVLVVVGLYVTLVWPLTFWDLANLGLEKYASWTNTVLWSVFAGGSMAGYWCFSGAAFKAKPKARGPVRATRSHK*
Ga0181532_1000005178	F006325	AGGAG	MTNLGWRLAQIEELEQKLARVLAYASREVLNDAEVQEFYQLYEEIQRRALAVSAA*
Ga0181532_1000005179	F065012	AGGAG	MKNAYEVLQQKETDLARVRHEIESLWIVASLLSDELPSEELTKKRARSADETLDRGSENATGTDGLFSSINPTPRPRFWNILKRQSSS*