Scaffold Ga0181532_10000018

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000018
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 187284
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 101 (64.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F008269	Metagenome / Metatranscriptome	336	Y
F036816	Metagenome / Metatranscriptome	169	Y
F062021	Metagenome / Metatranscriptome	131	Y
F077544	Metagenome / Metatranscriptome	117	Y
F079490	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000001811	F062021	GAGG	MLTFFLYLITGVITGFHLYTLLSFAVYGVPVNPLELVAFLGSFGLVIAAYLSLFRPHAAARLALIACLLMWSFYAPAIANRVRARLGKPVAVSEIIFPSTGLADVLLCPGSNRL*
Ga0181532_10000018121	F079490	GAG	VVEVVKGRQNAETTLKNFESEQSPADRHEGWRYFLEKSTLKAGTNPAEATELRQAELESRESKATQEGESSRGGGGTSR*
Ga0181532_10000018135	F036816	N/A	MLVTVPVSLLGQTAPGQTGAAILHTQGGVWVNGYEARDSSAVFPGDLLETKPGSSANLSLDGSTVLIQPESVAKLQTNLLELDHGSVFVGTSKSFKVRVTCLTVVPVLNEWTQYEVNNLNGNVQVAARKNDVNVEREMNHRKPSPETEGSQGSVVHETEQKSFDESQICGAAAPPVGAGTSLSTKWIVAGAAGAGLIVCVLLCRGGGKSPLSSSTP*
Ga0181532_1000001833	F077544	GGA	VLGEKETYSEKPRVLGNGSGLVLRVLWKIAAILIFSVTALAFPAREKDATQYGAGLIMNLTFPESEVTQVVQDVIQNGIIRGTKEYNKDEYITGAVPATSTRVFPEWTEGGKVFYKERLKAIDPRNFKDSGDVGTLVVRYVVQPQGDKNTVLRIDARFVEDFRKTSHPSNGSVESAEYKDIHDHLDAIESMRAQTVEAEKEKQEQLAKKEMPALADETPPNAPQSTPANTYRIDAPSTGAPPSPPQTLEEHVQDLRRQVQRLVKAPGAALKSAPFHTASSLQSLPTGTEVLIVISTTYWLGVETHDGQHGWILRDELELLP*
Ga0181532_1000001866	F008269	GAGG	MIGTGEARLHCAGRRRRFDRSSLILLIGCLALLGSLPVHAADPATVIFSLDFPNSDPEHYSITVQSDGHARYECSGRISDDSDDRETYQTEFTFSDATRARIFDLAVQAHYFSGKLDSGNRKLAFTGSKKLVYKDGQREASAFYNFSSLPAVQQLTTLFQSVSATLEFGRRLTHDHRYQKLALDDELKRMEDQIRRGDLIELQAVRPVLQEIHDDSSVINMVRARAQRIMEMGNPAPATH
Ga0181532_1000001872	F000838	N/A	MPGRAIRTTSRIAFLFCGLISLFTGVPYVMLRGVELPVQSEWVIFVVALALVGVFSVTLAVLPRSWIAKVCKKDRDDEQLFSAPLKLLGGFAAISYLLALVAYLAPHRWNLDPQLMFSLCPMYFVKMTFDPSLVAIFFLLAPMNAAVYGSLGLTLGYAWLAFGKRT*