Scaffold Ga0181538_10200928

Overview

Basic Information

• Taxon OID: 3300014162
• Scaffold ID: Ga0181538_10200928
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1118
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F015781	Metagenome / Metatranscriptome	252	Y
F074485	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181538_102009281	F074485	AGGAG	MQPVNGVDQAHDAATISSPPTEHSEDLPQLPEDLKVKLKEPLPREAVSPNPQKPGLSGIKVIYV
Ga0181538_102009282	F004122	N/A	LLPVLDLQPMDPVLYQRCLTAVWRSRKSAISRTDLQQAAGLGFQAETVDFDLLLAQLIRDGILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVKVLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRNFDLEGEAKCNQ*
Ga0181538_102009283	F015781	AGG	MNSVVDTIVAAPASSEAQLPSRVLEIRPEESKLVCVGAEGREFALSRLVGSNVRIGDEVLVPASTGTATV