Scaffold Ga0181538_10041611

Overview

Basic Information

• Taxon OID: 3300014162
• Scaffold ID: Ga0181538_10041611
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2931
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181538_100416114	F016632	AGGAGG	LTGILEVFALAEIGSGIGFLASWRNKVLKAKVNYFRQPNDRPSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYEAFRQIVRGLALAHSPMRQALRKKGGRPW*
Ga0181538_100416115	F027079	AGGAGG	VIKSFLNLCLLLFLDMLAYMVAFTAAAAVAWAAVCGAKWIFAAFRNSVVSLRGRWRKKEMCAHATR*
Ga0181538_100416116	F025427	N/A	MEELLASLGTCPIQKKGLFWRLLKLYWKKLLFIALMLVLPGGLVVLFICITAWALNWEREMTAYMDETYKKWKEEHDVHSE*