NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181529_10413368

Scaffold Ga0181529_10413368


Overview

Basic Information
Taxon OID3300014161 Open in IMG/M
Scaffold IDGa0181529_10413368 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F099600Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181529_104133681F003175GGAGGMNRIELSGKSQGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPAANIEHGVLACECGHRGTPRLEESGYQVSHALIEIVGDTIIASGWDGSSRAVSEEGDAYW
Ga0181529_104133682F099600N/AVLEALGVPRHVDVRWEMTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELDTRELCDEERELAREIALGSHMCRQPRGTRERFMRRICGGQTDEPDRA*
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