Scaffold Ga0181529_10032549

Overview

Basic Information

• Taxon OID: 3300014161
• Scaffold ID: Ga0181529_10032549
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3972
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003175	Metagenome / Metatranscriptome	503	N
F008922	Metagenome / Metatranscriptome	326	Y
F014565	Metagenome / Metatranscriptome	262	Y
F063105	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181529_1003254910	F008922	AGGTGG	MTTKQRLACGAAILLSIDARRQRTENRNELLALEQAIVDRELIELVAGGLCDEKREPAGDRVRKDTCRAATRATGELYEKELRRANL*
Ga0181529_1003254911	F003175	GGAGG	MNRIELSGKSQGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVECRPPVANIEHGVLVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCDRCGKLHPLPPELHIDWR*
Ga0181529_100325495	F063105	N/A	MRAADELTLALIALARREALEAGLGTNGRMDLDGIRSTAEPVGVNIHAHGD*
Ga0181529_100325497	F014565	AGGAG	MKKAVNSGLILLSIGALLLSGCGLRQCLHTTMGCEPDRTEREKPCREFGGPTTGCHFN*