Scaffold Ga0181530_10158572

Overview

Basic Information

• Taxon OID: 3300014159
• Scaffold ID: Ga0181530_10158572
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F023143	Metagenome / Metatranscriptome	211	Y
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181530_101585721	F070324	AGGAG	MANINELMEGWGFGKQTAIGTANLVAAIWRHTNLNTKPWAKVPVNEDDRA
Ga0181530_101585722	F023143	GGCGG	MRRTFMDWVFMQSPEGEVREVEATAAALTPLMVAGWHQVPPPVTTNQKPPTAAEEKK*
Ga0181530_101585723	F003186	N/A	VINPKTILAEWVTALQSCPELVTAIGGDGGNIRAFMEGLATDNNLRLAILQMPPGSMLVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0181530_101585724	F002261	GGA	MPNWPSIEAFVDGVVAQTFGESVVYQPVQAGAAQGSAFTVTAVRHLRPRDESGATASFEEISVNPSDFENPPAKGDWVTAWGAQYVVTTVRQPDAYGMLSLALLQRS*