Scaffold Ga0181521_10000376

Overview

Basic Information

• Taxon OID: 3300014158
• Scaffold ID: Ga0181521_10000376
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54123
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (67.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007294	Metagenome / Metatranscriptome	353	Y
F020297	Metagenome / Metatranscriptome	224	Y
F046491	Metagenome / Metatranscriptome	151	Y
F053728	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181521_1000037633	F020297	AGGA	MNFLQILKSILSVAPSGITLTQEVVELVQAIEGAFTSGSTPPAHQQAVVSALGAHLAKQ*
Ga0181521_1000037642	F007294	GAGG	MALTLAQLQANLDAINTAIGDPTLRARFSDGREVQYRSIEELRKAKAEIEEDIRELSGGPGGRVRLAQHKRGDGRSGPTLSDRW*
Ga0181521_1000037645	F053728	AGGCGG	VTAVLDRIFQLVRPRWRDSGPQSFMTLAKAPRSKSKLPTSNLYVVETDFAVSPDTYNNLQAMLNEIREKYGLDFMILEPGFKLKRFDDY*
Ga0181521_1000037649	F046491	N/A	MSGWSTNNANANLIMQNRFGEPVMYQAMQGGQASGTPATITIIRRLRERSEAGAVASVEEIEVNPVDLPNPPQRGDSVAAWGAQFTVTTVRQPDPYGMIHLTLTLQPR