Scaffold Ga0181518_10088924

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10088924
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1745
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F047435	Metagenome	149	N
F093078	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_100889242	F093078	AGGAG	MKMIFGFLLFVAAVAITGGLYLFIRKPAQKKTDLEKLESVCRQIFYRIRQLDDYLARIYTTAVCRMIPSSRKERSNVSEKQSSGSDLPHDSGVISAE*
Ga0181518_100889243	F047435	AGGAG	MSKLTLLAFLGLIYIGVVRLAYFTISVFFILFFGMSVWELIRTARQPAKHPFAAQ*
Ga0181518_100889244	F009261	GGAGG	MILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEFTLDWIDRNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMRARKKHVHNVLKGVA*