Scaffold Ga0181518

Basic Information
Taxon OID	3300014156 Open in IMG/M
Scaffold ID	Ga0181518_10068576 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014156 Open in IMG/M

Scaffold ID

Ga0181518_10068576 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2053
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2053

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_100685761	F003859	GGAG	MNERNGEKSTSTETPNVASSWPGASLCKSLKLGWQWRHLKWAVAAASEAAQGHEANGVRPGAQEFKTLYNEVATRVQQYSCESGDPIDTLKARLPALCAIERLANPEASVPQNRLGLTLGVVIASVLGSIGIGVLIGLGAGMAHWIAHLFA*
Ga0181518_100685762	F016632	AGGAGG	LTGVLELFALAEIGSGIGFLVGWRNKVLKAKVNYFRQPNSRSSPFDKVLRGKVGRAATRQDRLRLQLADGLVNVIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGRPW*
Ga0181518_100685763	F027079	AGGAGG	VIKSFLNLCLLLFLDMLAYMVAIVAAAAVAWAAVCGARWIFAAFRNSVMSLQGRWRKKEICAHATR*
Ga0181518_100685764	F025427	AGGAG	MRPGELEKLLASLKNCPIKKKGLFWRLLKLYWKKLLFIALMSVLPGGLVVLFVCACVYALNWEREMTAYLDATFRKWKKDNDVQCDFDGWLDEKGNDRV*
Ga0181518_100685765	F002761	AGGA	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGLKRCKPRESALRWINSHKVITLTATEIVNYSVHGISSPLGVTFALGGTIVNTLMVTFVVPIWCRLTRLESRLS*
Ga0181518_100685766	F039911	AGGAG	MKYTIAVVLTVATGIAGYFGIRRLMHKDLGFTPVKRYASKLAKTLLHTEATAAQEAGVSPAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181518_10068576

Overview

Ecosystem & Geography

Associated Families

Sequences