NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181518_10025552

Scaffold Ga0181518_10025552


Overview

Basic Information
Taxon OID3300014156 Open in IMG/M
Scaffold IDGa0181518_10025552 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3937
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. ARZ01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004375Metagenome / Metatranscriptome441Y
F024354Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0181518_100255523F004375AGGAGGMAWSKSVRTDRVRLRDDLTDELDKFDEQLRWGDFLHSTPNGPAIGRYLRSERGDRVESESFEPEYRYFYDASSQKADYLAVVRMEKYPTVIRHTVENVTPDEAKSIDARTACTLRWSPAQFGWAVAELEIERQSTLDSAE*
Ga0181518_100255524F024354AGGAVDAVRCADCGYLSRRARIERSGWRGSEGYYEADTVFRKNASESFKFVPGNLSAEKDGEISCYRQAVDLSGEIRAVREAKRISAVDPAQEVINRSRQCSKFFIYEPGIDPPGHLVEEKASALEDDRKRFEKTLADFQARLSARDARQNRRLGIYALIVVLIIGCVQIWASAIAMSPDAIGINFGRRVLAGTQTVASWFNRTF*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.