Scaffold Ga0181518_10000345

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10000345
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52926
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000737	Metagenome / Metatranscriptome	914	Y
F001499	Metagenome / Metatranscriptome	682	Y
F075380	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_1000034513	F075380	N/A	MQRLILFLSIFFSIIGCLTGRAYAQFAEDSPPAFEAYGLISGMKTVDATDTMVITNPPPNQPLGFTPSGLASGVRTGFVWRHENVGLVADLGFHKYSDRSGSTSLAPLMAGLRVYSEEHFRASFFGEGLAGAYRWTVNSGNTNFTTRKGIVLGGGGMDIRLTRRLVWRVFEIQLGLAGAQTGPLSTGGPSTGIAYRFGGR*
Ga0181518_1000034539	F001499	AGGAG	VEHIDPAVVYRFDTRSSRLCEFCRELDPQFPQRRPSDQMVTTSHKATASAHVTEDGYVRHRMIELRRMATRAPLTAA*
Ga0181518_1000034541	F000737	N/A	MSSTATTQKKPRGSRVKLGGSILALVVLENGRQIRGRMNQLSVNGGLVSLERPLDEGIKVTVVFHLGVTSIRCRAQMMFPMWATQGCLQPFRFLELPEANRASLNQELEDLVKSGAPQEEEVEE*