Scaffold Ga0181518_10000051

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10000051
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130031
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (74.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000408	Metagenome / Metatranscriptome	1172	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F059669	Metagenome	133	Y
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_10000051147	F000408	N/A	VRGRDRRGFAFEEETASENLCRSGAAFHTRFDLAIGSNLEIRIPMQGYPSRRYENDFETQGRVVHVSDSQPDGERLVGVQFVGPRFQRVFRSESAA*
Ga0181518_1000005120	F000552	AGGAG	MGAMRRKMVWLKKQDFQGWACSECAWAFNPTGPVVGESIDEMKTHYEQQRDKEFTSHVCAEHPRATKNPR*
Ga0181518_1000005158	F079694	AGGAG	MPTYQNATPPSALYPGDVGYSWNNEAFPGATTSGSQFALSTPGGYAPETGFAVRWQTIYGSAPSAVNIRLQGAMADVDAEYMDIDTSTNTAGEGRQVTGVQARFLRIKLYSSTGGSGLTAKILV*
Ga0181518_1000005165	F059669	GGAGG	VNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEVTAPAPAPPENKGRRASDNFLGERIVPPRASRGRT*