Scaffold Ga0181518_10000029

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10000029
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160146
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 103 (74.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004193	Metagenome / Metatranscriptome	449	Y
F019342	Metagenome / Metatranscriptome	230	Y
F085029	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_10000029133	F019342	GGAGG	MHKRFILLLGVYLGSHVPTAAQKPAPQIVPAQVRVAPIVTIVRTVPAPFLFPSFPLSESPGKSVAHSSYLFAGAYERDQSLESLSQMQKAKTLFLKQSSLPLVQLWGGRLRLDGFKSDINMQNVQLGPSGAGGLLDYRPERLGSPGGPRSFGLCGVNLSFHFGRDSRTKPPTQVVRRMTRFVGAVLN*
Ga0181518_10000029137	F004193	AGGGGG	MPSFPVPKGRRSKRVMSKRRASLVINLDRNQKRLPCLVLDSSKEGFRLRGSFHLKRGQVVELILEENSPSSERCSVVWVGKAGSKQEGELGLEIIQAIANVR*
Ga0181518_1000002981	F085029	GGA	MGCIFGGIFMKRLQIVAGIALIALGLALGTTAWPQKPSPGIVDREREGRSFAVNLVRAIQKAQLDFKSKHAIYANWDSLMGNGYFTSTGTKWASPDFPTVGQALYGSGPEIVPGWRLRLNVSHSGSAYDLLLEDVNDPKCGYAALTDERGTIRQAKSVDCPIQ*