Scaffold Ga0181518_10000004

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10000004
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 297850
• Total Scaffold Genes: 259
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (69.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002273	Metagenome / Metatranscriptome	576	Y
F003591	Metagenome / Metatranscriptome	478	Y
F006273	Metagenome / Metatranscriptome	377	Y
F088106	Metagenome / Metatranscriptome	109	Y
F091201	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_10000004105	F003591	N/A	MLWLPFYRVRPTLMKQVLASILTTLMIVAMTLSAMVILERATLYVTSIASPLPRAGAIAAEILLGVVLLLGTVWLATHLAVLIFAPKQNPPEGGTLG*
Ga0181518_1000000429	F091201	AGGAG	MKAARFFSMAAFFVFSCLSVSALAQTPPANPALGLVAKSVSGHIGDAAVSEGATVYSGDYLSTEDAGSMLVRVGPLSLELQGSSAVHIYRAPYGAIVELNRGTVVYTTPGTQENIVIVASDVRVTPVLALADLGRVSMDDPCDITVYSQRGQVNVQVGSESHLIEEAKAYRVHAEYEISYRQYVSPDASDYHHYHDHRPCAPVEMAKGKPPIAPGQSRFLYVAAGVVGIATVWGIDRALESPNRP*
Ga0181518_1000000453	F006273	GGA	MSTTPRAIVSTSQESLLQRAKAFLGEAIFLIIHHFPRLLQLHRNEKSWTLFRVALACLGAAIVILPLSLWNGWITASFGLLLFVVAILLPPAELESGTDRKARELGAQTVVSGGEYQPGNAPAAEVRLFISPAHIWALDAHFDPLLVMSAPEICNLRVEEKEQRWLLQIRWADQKAEFAYGGFFAERFARLAEESIRAALPQKLPATPKRRAVSAA*
Ga0181518_1000000457	F088106	N/A	MRRVSSPKPPVKPQSVPSNPIFVGAPVAGNDLGVPGLGFDYVDYFATHPNAGRHHFAGGVVPFVGGGIYVPYPVYMEGGAPAEPAAESSPAEAEQPPPAEETAARPADVAVRPYADSRAPAEPDSEYVFVRRDGTVFFAVAFTFDSANLRYITRDGFRKTAPLASLDLAATQQFNEQRGLSPRLPS*
Ga0181518_1000000493	F002273	AGCAG	MTCGIPLAVIYAFYRVRKLRTEERLAALARGAAIPMEPELSQYAKSRRAGILLVTGGLGFMTMFAVIARVVGEPETLAAAAFGILPLAVGIGYFLDAAMIRRDLKAS*