Scaffold Ga0181524_10026572

Overview

Basic Information

• Taxon OID: 3300014155
• Scaffold ID: Ga0181524_10026572
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4086
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181524_100265723	F031336	AGGAG	VLNGDVIILNPPKDPSWFSDASQSVSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWERRKSKQAVQVGELERLYSAEPIPWPR*
Ga0181524_100265725	F039920	N/A	VEFAMIDVQALDRTGRRQVLHGFIRRIWQEGNNAVLRDAHQNLPGFTALMERNVRVMRPGVALEKTLQAVLARPAKPKFRRADPQTNHSSVRFIGLDKLKF*
Ga0181524_100265726	F044872	GGAGG	MHTGLLNTFASMVKGNLIVVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRLARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA*