Scaffold Ga0181524_10023928

Overview

Basic Information

• Taxon OID: 3300014155
• Scaffold ID: Ga0181524_10023928
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4380
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F057853	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181524_100239282	F057853	N/A	MSKLEQFILFHLFKGPALLLAAALAGGAAAGALQHETKRIRGLVQSRAKLDLELIQYNSHFLSTNSSVESVLSAYQIPCRALTNDPVQLELDYEAAKKLERVGLLVQAAEFENGRLTVTLKDYPEAK*
Ga0181524_100239283	F038792	AGGA	MNTPSRKQFMELITRFKLATEATKEALASEYEQVTRQDAEARRPITPLLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVAPHLRDNQEIKEVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQKLAGAKPPFPVVALSEPERIRKALTHFA*