Scaffold Ga0181533_1008907

Overview

Basic Information

• Taxon OID: 3300014152
• Scaffold ID: Ga0181533_1008907
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8257
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F025900	Metagenome	199	N
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F056263	Metagenome	137	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181533_100890711	F025900	N/A	MSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEAPAEQVNTDPFPDGEFGKEAA*
Ga0181533_100890712	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTNVIH*
Ga0181533_100890714	F009261	AGGAG	MILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAVKKHTMSVLKGVA*
Ga0181533_10089074	F031336	AGGAG	VLNGDVIILNPPRDPSWFSDASQSVSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWERCKSKQAVQVSELERLYSAEPIPWPR*
Ga0181533_10089076	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQTLPGFTALMERNVRLMRPGAAMEKTLQAVLAGPAKPKFHRVAPEVNHSSVRFVGLDKLKF*
Ga0181533_10089077	F044872	GGAGG	MKTGLLNTFASMVKGNLIIVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLVQIYANHLFISDPTSEFGTCMRIARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSSTHILQRVVVDTVQLLEAA*
Ga0181533_10089078	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGSTGACKLIIAYHPGFPLALGRIECVSGLPIDVRVNVLESTPVMHTAELVFTGKTTDLCELQMRLTQWATQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*