Scaffold Ga0181539_1100127

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181539_1100127

Scaffold Ga0181539_1100127

Overview

Basic Information
Taxon OID	3300014151 Open in IMG/M
Scaffold ID	Ga0181539_1100127 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1222
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)		Depth (m)	.6 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083589	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_11001272	F083589	AGGAGG	MGVLTEHMTQLRNEILALRSARQGLAQALERETEERRADVSQTLANFSKSFAARARRTKADRLGSLSDLKRTVEGLRAEVHTELSSIRQAWRALGTPSCGAVEKLASHTMQETKADLEGSQSETGGHPSFEVGGGEKSARKKRKH*

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