Scaffold Ga0181539_1030951

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1030951
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2766
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_10309511	F009261	GGAGG	MILTPSNTGNLVAGAGLGIFAWGAFLKADKVPWLKKLMTTRRKELSLDWINRNKGISLLGLEAINLGIHGILSANAVIFALGNTILNIFMLWAFLPFRTARAEKQRVQNVLKGVA*
Ga0181539_10309512	F005296	GGAG	MAPWLLWFLPSFEAGFWSALIAGKVRDQGKIRELLIYGRPARTCLPVIDERLRKVAGTPTKSQAFAARRIAAGLRWLANTRAMDYAILLGLKRAWPKGQTISAEVKMCL*
Ga0181539_10309513	F012316	AGAAG	MPVSSALLSLLHREENMSTTIIDHPAGPKRRCCKVWEGLRSLGTRGISAVNRWHRHQDQSALERALARIIETANGHRAKGLPKGAPAYVVLRDKADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDTQIPSGLKLLAALLGTILSLVLLGAASGLVHAGHDWVMRFVGR*