Scaffold Ga0181539_1022696

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1022696
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3462
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_10226961	F031336	N/A	VLNGDVIILNPPKNPSWFSDASQSVSLFFWEHSDLIPLLMAEIALAVLIFAGFFWWERRKSKQAVQVGELERMYSAEPIPWPQ*
Ga0181539_10226963	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQSVLARPAKPKFRRVAPEVNHSSVRCVGLDKLKF*
Ga0181539_10226964	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0181539_10226965	F062380	GAGG	MPSDFNDSECNDFEKLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0181539_10226967	F050080	N/A	MHNLNQQRKCPKEGNQMASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQSMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLGLAVTPGPVAVEAAAEALTTAA*