NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1022696

Scaffold Ga0181539_1022696


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1022696 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3462
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031336Metagenome182N
F039920Metagenome162N
F044872Metagenome153N
F050080Metagenome145N
F062380Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0181539_10226961F031336N/AVLNGDVIILNPPKNPSWFSDASQSVSLFFWEHSDLIPLLMAEIALAVLIFAGFFWWERRKSKQAVQVGELERMYSAEPIPWPQ*
Ga0181539_10226963F039920GGAGMIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQSVLARPAKPKFRRVAPEVNHSSVRCVGLDKLKF*
Ga0181539_10226964F044872GGAGGMNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0181539_10226965F062380GAGGMPSDFNDSECNDFEKLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0181539_10226967F050080N/AMHNLNQQRKCPKEGNQMASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQSMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLGLAVTPGPVAVEAAAEALTTAA*

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