Scaffold Ga0181539_1003550

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1003550
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14155
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042862	Metagenome	157	N
F053734	Metagenome	140	N
F058622	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_10035505	F058622	N/A	LEYREQYIKWEAFTLWVHAIEEAEHQTPAWLWRVVERRCAGIESEKSPKLWKCLDTWKHKTLFAKPNREGWMRAVSFFAARDLAYARNWAYWGYCERQWSVRRPASYPSFDEWKSAAEVCPGEVLDSSGLRKERKALIKEAARCGKKRLERAIGTYVDLETFAYWLRPIVDHGLPLSGRVLKEFQSRFPSLEMCDNWNWDQFWARLRHLHFQEAEAQGWLDAVVYTAELHPRRIKVIDYWLLYWASQWPKDQPALYPRFEEWRCKAESYVPNGCDPEGASSVPLQG*
Ga0181539_10035506	F053734	AGGAGG	MGNVSQLCIQGLSRKQNRAIDAILKSGAAGGPSRLYKSIQQIREQDPSLSLRRLLKRTAVLQLSSWQNPWMDGEKNYVLEHAREFPVADLARRLQRTQSAVYQLLWKYRESAKFQDGYTQKELAEALHVSPRKVRGWVRLGWLTLYQDRIKDRSLVRFLEGHSDEIDAKRLESDVRLWLLDLGFHEDAIHSVRWFRDRKQTMRVHICDRCGRKVHGNAFYRHLKACAKGGTCLTKDTDNRRML*
Ga0181539_10035507	F042862	N/A	MASRDFESIPQVRVWPRDKSGNAIEQDLVDAAERNWARIDAYAQRHQQDSARTANLLEATLLALSRARKTNGRLMRPIRNLDNYLYSAFIRRLNRQLAKEPNIETVGSIQDLDSLSAFRTKAAPPSIEQELLVKEVMTFLDERPREIFSLRHTGYSWRDVAGILKTTTNNAEVRFNKGLQRARNRVMKPKDSRNTSGKGGETHE*