Scaffold Ga0181539_1002292

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1002292
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19336
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002927	Metagenome / Metatranscriptome	520	Y
F003855	Metagenome / Metatranscriptome	465	Y
F008957	Metagenome / Metatranscriptome	325	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100229211	F002927	N/A	MEPESDSRYRFSLKGSAGLIVAVLVVAVLLIALPAYRWFFLISVLIGLVIAGGLMLWYKLHPIKEQDVHPKRPLGL*
Ga0181539_100229215	F008957	GGAG	MTDPVEQEKPEKLKKSSWWWPAIVASSLAGAAVVLFRGCWHGKMSWPVGVQGYSYQVCLSCGAKRLFDEKTFSAYGPFRYDLNELIAWDKSTKPKSRPVADVQRPAS*
Ga0181539_10022924	F003855	GGAG	MTTERDLTAALSHDLTEPLTLAQREALERAVVKIVALGAKVGVSVDQMIELLKSGLTVGELLDYLAARSGEVA*