Scaffold Ga0181539_1000659

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1000659
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41326
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003670	Metagenome / Metatranscriptome	474	Y
F006132	Metagenome / Metatranscriptome	380	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100065912	F006132	GGAGG	MKKWLCSVAGLSLALAGSVTAPAQTPAVPPPNILNIETVNIKPYADGSYDKVASEYPALSHQLKDPTHVLAMESLTGSPRALYITGYDSYEALQKNEEWLLGDAATDAKFDALDARLAPSVAEHEYAIWHYRPDLSNNVAGADIPHSHYWEVIIFHMRPGRVEQFGELTRLYRDASLKSGQNVPWATYQGLTGVTDSYLVLVPMRSLKDVDTGLAHKKDFGAALGDEGRGRMNKLSEESVASVEDNIWMVNPEWSYVEKSWIEADPQYWAPEPAAKPARRKPTAGAAAEAPPAH*
Ga0181539_10006594	F003670	AGGA	VKIRLAAFLFLLTVFSTTPVWARSNSHPANPSDPGYVFALATANRFLHAWQTGDLENGMVMLSDGIRHSQNADKLEQFFSNATDRAFEITRGHGHPGRYSFPVVLVTPRGSSHVMRRFSEIILVETGKNDWVVDKLP*