Scaffold Ga0181539_1000219

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1000219
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68581
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (54.39%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000833	Metagenome / Metatranscriptome	871	Y
F001355	Metagenome / Metatranscriptome	716	Y
F002585	Metagenome / Metatranscriptome	546	Y
F009619	Metagenome / Metatranscriptome	315	Y
F039234	Metagenome / Metatranscriptome	164	Y
F064951	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100021913	F002585	N/A	MPRSCFFWAKLAFPVCAILSGAILSPMLSHAEKQKPLPAVRWTAGAPGCAFERGDDGRYRWTMTGKDLTVTLLVDSQELTKSRRRFYHLLGAYVSATYTGQDKFEFPADVRIDFVRHHDVLEAYMDPTELSHRLQSDIDTLVFETERQIKKNPKITEEKTARLREYEKEAAEFIEFVGTQNLDPAGATLNPGNPEAHGWVFFATSNKWIGPWKDREDFILGVWMKDKVWQFPFSLPPTEGDLILRKPAD*
Ga0181539_100021915	F064951	N/A	MNAKTELSAPKRRTRAEVQQLVAEFVSSGMRRSEPCRSRGLSFGTLDRHLKKRRWKRKGAPADGRLVPVKLAAKKSP*
Ga0181539_100021928	F039234	N/A	MMTLSGERLSVIHDAFKALAGILSICAIFSGTFSRASCSVDIVIVNGQVEHSPPKATVRVQLVYPNQNMGESGDVTVEGGSFRIEIPFLTQSRAPVLGGSLREKCDRKPKTVVVTLIEADQEYDRVSLDLAKDFKMADPSAYALRSQILLHGPPSTPPIR*
Ga0181539_10002194	F000833	N/A	VFPAQMMLAGETASAMLYTNGEAWLNGSEVPKSVAVFSGDMLQTRPDSTASIQSNGSNVMVLADSLVKFEGPAVELEHGSVRVTTSRGMAARAGDVTVKPASDSWTEFQVTDVDGRVQIAANKGDLTVQDDKGTTTVTQGQQTTRDDTADTEKKKKKRRRGGGAATAAGGGIMSSTPAIVGGLVAVGGVGVWVWLQQEPPMSAACPTVPCQ*
Ga0181539_100021947	F009619	N/A	MGGFSILTNRKRAVVALAHSVVFLLVAVRQMVAANSAAGIWVPSTVSRGTWILCGIFVIVSAILLWLLVISRGWMEKFYFGFCTISATSGLVRTAAGDQAFHAGLYIRVVMLVSAVLVGLLIVRLHFRPRSHVESEYAEGSF*
Ga0181539_100021954	F001355	GAGG	MPMDYPIIKRSSCSVCGLDTFRHSGWFLVVENRWLDRLKILSWHSSLAMQKDMKSVCCRQHLKTLIAHWLTQASLRLPPAHDPPLPIGSDPTLTDIDLGPHSLGRLVGELAVHRESFSRVWSGSPAALECILDALITIGAENKPHALECQLFDLPTESSHGLSLQ*