Scaffold Ga0181539

Basic Information
Taxon OID	3300014151 Open in IMG/M
Scaffold ID	Ga0181539_1000048 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014151 Open in IMG/M

Scaffold ID

Ga0181539_1000048 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	122404
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (58.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

122404

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (58.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000548	Metagenome / Metatranscriptome	1036	Y
F002944	Metagenome / Metatranscriptome	518	Y
F005828	Metagenome / Metatranscriptome	389	Y
F006230	Metagenome / Metatranscriptome	378	Y
F013198	Metagenome / Metatranscriptome	273	Y
F034666	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100004814	F000548	AGG	MGKTSSGGPRWIGVPVRVFAMTFLFTLLSFAVALLLSIMGTVVYSQVKHVAPNLMFAYRHIAFPFAITAGAIVLVLSLVMEIRNYRQRRTLEGIERVS*
Ga0181539_100004848	F006230	GAGG	MPIHTTRFYALQLACFVLFAFTLAGAQANLYGQNKDRQNQAPGPATPGADYSGMYSFLRDGEFVQVTVEDRGRVTGFVSRYGDSESDRGVFVDHFFKSGKLDGNQLAFTTETVHGVSFEFRGTFERGEGKNRGDEAYYVLKGTLVENTTDEAKKTSSRSSEVALKSFPQDMAPPPAEKK*
Ga0181539_10000485	F005828	GGAGG	MGCLICKDLERTFEFRRSQYAEARSAAYYRVSTELAAYKNVDMERAKSNLEEHQLVCVSAASGERRSRAPSALVLL*
Ga0181539_100004860	F013198	N/A	MRRNPTLSLSHAATLQGVKRETVKKYFPAALKRSHGKFRATKSDRYTATLNIPDADGNSIAVKTHSSKEREQLSIYLRDLGRYLRGNRNALAQWHGKRIAGVELVTSGRTIVAIEPALSDFSLYRTFNGGAD*
Ga0181539_10000488	F002944	GAG	MKNLLDALVAVLAGNAIYFLFMPHLPKVARHALFKEDWGLLVDFIICAALFAAVKYARRHEG*
Ga0181539_100004887	F034666	GGA	MLAWMPMSADESGPEKQVPVAAGLLYRLTVAFRSWAGAILAVYSIVLCRFGALKIRPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181539_1000048

Overview

Ecosystem & Geography

Associated Families

Sequences