Scaffold Ga0181539

Basic Information
Taxon OID	3300014151 Open in IMG/M
Scaffold ID	Ga0181539_1000025 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014151 Open in IMG/M

Scaffold ID

Ga0181539_1000025 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	140586
Total Scaffold Genes	152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	86 (56.58%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

140586

Total Scaffold Genes

152 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

86 (56.58%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008989	Metagenome / Metatranscriptome	324	N
F036521	Metagenome / Metatranscriptome	169	Y
F042692	Metagenome / Metatranscriptome	157	Y
F091183	Metagenome	107	Y
F104272	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100002517	F091183	GGA	MAGWASYILIRLLADSVKLRIFIDFKDRKFKITRLPPTTAATSRVQKLNTKMFGGKATAPTSHIHHFVFGMLLMPITFIALYYRLWFGPVLVGIVMSLIFSEVKELILMNWGA*
Ga0181539_100002533	F104272	GAGG	MKEGTLEKPYPLGDRSAPPIKCLNCDSKSFAIHLPKDLDEYYKESFDQEERETMFPKLFKDLLDTGEYYYSVLVTCAKCGHSLADEHLLFKPLGSWKPPKVNP*
Ga0181539_100002566	F042692	GAG	MDLRRRIDGVDVIANDNEIWFLQDGRICWTTKEEVWSCSSRLGEILRQKGYTVQSKRFPKKLRELILTMSKSE*
Ga0181539_100002574	F008989	GAG	MANNAVLIRGLDRDTYNNVVAKAKQQGKNVAELVNEALVQYMNQSPSESPDVFDTKRLVIAGSVLLSKSDIMGLHKELGNFHLENSGELTFDKDVDREAFQKIDRIHNTGKLRVPTDVHHFALLKAGQVRGEVEKY*
Ga0181539_100002586	F036521	N/A	MCAGRVFARGFAVVLLSLTLLLVVGGVSVNAYQSPPYPFPPTFPVNNFDFAITASTTLIRIQPGQSGGLVVWVDLYCPNSATNIRCDSTVLQTVSLTVSGCPGGAFCILDKQQVLLPPAYEAGSNFIIYTFPAIPVSATPYLITVTGVDQFGHTHSASFGVIVCYC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181539_1000025

Overview

Ecosystem & Geography

Associated Families

Sequences