Basic Information | |
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Taxon OID | 3300014151 Open in IMG/M |
Scaffold ID | Ga0181539_1000025 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 140586 |
Total Scaffold Genes | 152 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 86 (56.58%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .6 to .7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008989 | Metagenome / Metatranscriptome | 324 | N |
F036521 | Metagenome / Metatranscriptome | 169 | Y |
F042692 | Metagenome / Metatranscriptome | 157 | Y |
F091183 | Metagenome | 107 | Y |
F104272 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181539_100002517 | F091183 | GGA | MAGWASYILIRLLADSVKLRIFIDFKDRKFKITRLPPTTAATSRVQKLNTKMFGGKATAPTSHIHHFVFGMLLMPITFIALYYRLWFGPVLVGIVMSLIFSEVKELILMNWGA* |
Ga0181539_100002533 | F104272 | GAGG | MKEGTLEKPYPLGDRSAPPIKCLNCDSKSFAIHLPKDLDEYYKESFDQEERETMFPKLFKDLLDTGEYYYSVLVTCAKCGHSLADEHLLFKPLGSWKPPKVNP* |
Ga0181539_100002566 | F042692 | GAG | MDLRRRIDGVDVIANDNEIWFLQDGRICWTTKEEVWSCSSRLGEILRQKGYTVQSKRFPKKLRELILTMSKSE* |
Ga0181539_100002574 | F008989 | GAG | MANNAVLIRGLDRDTYNNVVAKAKQQGKNVAELVNEALVQYMNQSPSESPDVFDTKRLVIAGSVLLSKSDIMGLHKELGNFHLENSGELTFDKDVDREAFQKIDRIHNTGKLRVPTDVHHFALLKAGQVRGEVEKY* |
Ga0181539_100002586 | F036521 | N/A | MCAGRVFARGFAVVLLSLTLLLVVGGVSVNAYQSPPYPFPPTFPVNNFDFAITASTTLIRIQPGQSGGLVVWVDLYCPNSATNIRCDSTVLQTVSLTVSGCPGGAFCILDKQQVLLPPAYEAGSNFIIYTFPAIPVSATPYLITVTGVDQFGHTHSASFGVIVCYC* |
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