Scaffold Ga0181539

Basic Information
Taxon OID	3300014151 Open in IMG/M
Scaffold ID	Ga0181539_1000015 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014151 Open in IMG/M

Scaffold ID

Ga0181539_1000015 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	155765
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (57.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

155765

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (57.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002181	Metagenome / Metatranscriptome	586	Y
F003876	Metagenome / Metatranscriptome	464	Y
F004841	Metagenome / Metatranscriptome	421	Y
F014874	Metagenome / Metatranscriptome	259	Y
F024629	Metagenome / Metatranscriptome	205	Y
F033673	Metagenome / Metatranscriptome	176	Y
F071890	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_1000015101	F014874	AGG	VRLWEEMNNEELDAFQSDVLAEETHHSRGWSLLVLLALLGPVIAASWARTTAGLWPAILACLAALGVGAMAWSGFQYRFLRQGVEIRMLGFRLRSIPKQSILSYSIEPWSLIRGYGIRGIGSTRAYVWCNQVVHIRTSNGEIYLGHSDPERIVRDLEMVTGVLSDAGFVSEHRFSDAESFRNQKPL*
Ga0181539_1000015112	F071890	GAG	MSDEQTDLLCPHCGQAFSAFLHQMADKNAKVVCPSCGKAHDGKPPSAAQPGAVAGSVKKTI*
Ga0181539_1000015119	F003876	GGCGG	MATTKIERAGVGFGIGRQGGSTVVEVRPHHDTISALRGVQVGFELLNGTTPEQAKKIIDVLNESVIGMFVTTVPER*
Ga0181539_100001518	F024629	AGGAGG	MKCKYKDLQFSMDQLRYMLKRDGLEPEQISALEDAEAELIGLGRKSNPSRREIFRVVRKVAEAIIKNFVS*
Ga0181539_100001535	F002181	N/A	MWIAGFAGGTEYRTMADSPKKDPELSSRLRKTNEELKNLQNSVKTGMINVKVLMDFRTATERARQASAAVQQWLDAQGKGGDPYKLMEQVVRQRVEMVTQLIKDVTIDLESLDVDFDTPGLPALNEAVRKLAKRLEKLFPQ*
Ga0181539_100001585	F033673	N/A	MELLLNLCWLSLLLPAWLLWRQRNSSTGSDRPAACPLVFVCALGCAFILLFPVISASDDLHAMRSEMEESSPGKRGVGQAAVEKASVWHSPWQNLPAVVATMASLGLTSEGRLELFIAPLSVPVAPSILRASRAPPCSRLG*
Ga0181539_100001592	F004841	N/A	VKKSQKSRKSPRAPRIRVPNNERALFTIDDDRFVGVLHRLSLTGGSAILSKGPIPHGTIGEIALNTVYGKVSAHIEFLHTGADGIALAQAFRFLAMEDTSSKRFAAAAKQMETEGYSDAPQTKPSPLSAPASEALGQLLHSVRRLAATLVANHFSVKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181539_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences