Scaffold Ga0119967_10165352

Overview

Basic Information

• Taxon OID: 3300014060
• Scaffold ID: Ga0119967_10165352
• Source Dataset Name: Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Berkeley
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Geyser, Utah, Usa

Source Dataset Sampling Location

• Location Name: USA: near Green River, Utah
• Coordinates
  • Lat. (^o): 38.938
  • Long. (^o): -110.08

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000320	Metagenome / Metatranscriptome	1306	Y
F000449	Metagenome / Metatranscriptome	1126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119967_101653521	F000449	N/A	MKNKKAGEGDIPSPDLDQEYELRTSAPQEEMERYYARKKATLQRKIRKINKKIKKNIYNPYAGDDEKHKNVPD*
Ga0119967_101653522	F000320	N/A	MSPTKSYKSEALGGEILRKINGIGEKTYKLKKDVNDICGLILSKPGATMFVEGHKAELWKEASDDFSQRWKEIAAEKYEVECMVHLMYDMVLLEEIKRKGKIVFSPKRRAMSMVK*