Scaffold Ga0119967_10150386

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119967_10150386

Scaffold Ga0119967_10150386

Overview

Basic Information
Taxon OID	3300014060 Open in IMG/M
Scaffold ID	Ga0119967_10150386 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Berkeley
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1174
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Geyser, Utah, Usa

Source Dataset Sampling Location
Location Name	USA: near Green River, Utah
Coordinates	Lat. (^o)	38.938	Long. (^o)	-110.08	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075683	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119967_101503862	F075683	AGG	MTHIYTANTQPATGWIDQCGEVEIRGGFDAGEMIRCGCCDKKRPAEDCVVQCYYDGMSVWCAEGKGCKSHAEIEQKRLIAHGNRSRGQMARRAKERLLLAAVVPLE*

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