Scaffold Ga0119868_1000903

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119868_1000903

Scaffold Ga0119868_1000903

Overview

Basic Information
Taxon OID	3300014059 Open in IMG/M
Scaffold ID	Ga0119868_1000903 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Membrane foulants
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Tongji University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13118
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (56.52%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Quyang, Shanghai
Coordinates	Lat. (^o)	31.3	Long. (^o)	121.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024268	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119868_100090319	F024268	N/A	MTTDTAGPDVDTTDGVFQIFLDLSDMVAGDELQIRIYEKARSGDTQRIVAEWSLFGAQSNPIWVSPALILMHGWDATLDAIAGTITVLWSIRQVA*

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