Scaffold Ga0119952_1028525

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1028525
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1739
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F041730	Metagenome	159	Y
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10285252	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAASYVSVDAYQALLTRYNTSNSIRVLVVDADVKATDAATYATDASKAASALANYNINQLMMMGG*
Ga0119952_10285253	F024770	AGGAG	MAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVYLGGEGVTTTSYGYLLKADTNFSIELQDDEKLYAVVTTSTQTVNIIRQGT*
Ga0119952_10285255	F053995	AGGA	MPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASIPTVSRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAISAADTVSIYLYNPTASAINDTARTFSYVWIDMTA*