Scaffold Ga0119952_1020154

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1020154
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2248
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017818	Metagenome / Metatranscriptome	238	Y
F035276	Metagenome / Metatranscriptome	172	Y
F037191	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10201545	F037191	AGGA	MTVAEMIEKLQQFPPDMEVEVTDGFQYKFYKGDFEFQMFEDTDGETIVDIGVGGFDYD*
Ga0119952_10201547	F017818	N/A	MNKDAYYDWIDENDTYPEHSHKWIVGLYNKYEGVEGLHRYFGVFETQTEARVFASDYKDKYTKPGFIKSIRVFPLCEVVK*
Ga0119952_10201548	F035276	GAGG	MSSYICCYNQETRELEHFKVPKLVYVYVIQLECEIKYGRGGVQKLYPGRFNGKFFEDEE*