Scaffold Ga0119952

Basic Information
Taxon OID	3300014050 Open in IMG/M
Scaffold ID	Ga0119952_1013247 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014050 Open in IMG/M

Scaffold ID

Ga0119952_1013247 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3087
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3087

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10132471	F001106	N/A	KNKADIVAALAEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPNSQPENTMLVRMTRENYRYDILGFTFTKEHPFVAMTSDDAQQIFDKEEGFRLATPKEVQEYYA*
Ga0119952_10132473	F056615	N/A	MYDLIDSFMPMFMDVYKQFDLQDSNTGAIKKEWQFDRTVPCSAKGIISNSSASRSGDKQVMSNKYLNDQILQVRTSEKLSLREKITNIRDSEGNVIWEELNFPTNTPTVFELMGITPMTDPLGGVVAYNSTVKRSENQTIGQ*
Ga0119952_10132474	F035307	GGA	LDNSSVLVTAASGLQKNMAGTSGKILKDSTVAQISAAIYYQSQVVSKITTNKQFQTKFQSIIFNQLEKDFGLYLDSQARINPKSLHHVYEWNKTGNKSSRLFKLNILNSNGLSFKIGSTFLSSKSSVPNNFAKKRYVFANKASIMESGMPLVIRPRAAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKNSGFQRLFNSSITKAMKLPSDIKKVKYSFSPNTLNMQAESAIASAFGGAV*
Ga0119952_10132475	F000258	GGAGG	MTDYKTDIMLDLRKFLWDQLKTNNIFTATDYYSDNIGQEIVPIIPIQQSPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISATTPSEELAGFLSTDVILEVKYARHLDSVGRFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119952_1013247

Overview

Ecosystem & Geography

Associated Families

Sequences