Scaffold Ga0119952_1009243

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1009243
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4047
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072277	Metagenome	121	Y
F102814	Metagenome	101	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10092431	F103142	GAGG	MALDYKGFKWGERISADQDSVDRFLHEGLVPQSPSVGDLQSAAEWIATYGSENAEEAQGWANVVAFLILTAESKEKRSVLAQAKKKFAEANGIPVSQVRINRNN*
Ga0119952_10092432	F072277	AGGAGG	MEKCVKCGVAVEKMEVFPKGVCLACYAVEFEKKFQSALKIARFK*
Ga0119952_10092434	F102814	GAGG	MMAGTKPRDSQRQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHKQYAFWASVYPSKIIVEAGSGNHATMRNRNWETVRLIRLNKWGRNKFIVLHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVRVMTKTKKARVPRKRETESARLVA*